findPeaks.MSW-methods: Feature detection for single-spectrum non-chromatography MS.findPeaks.MS1-methods: Collecting MS1 precursor peaks.findPeaks-methods: Feature detection for GC/MS and LC/MS Data - methods.findPeaks.matchedFilter-methods: Feature detection in the chromatographic time domain.findPeaks.massifquant-methods: Feature detection for XC-MS data.findPeaks.centWave-methods: Feature detection for high resolution LC/MS data.findneutral: Find neutral losses in xcmsFragment objects.findMZ: Find fragment ions in xcmsFragment objects.

findEqualGreater: Find values in sorted vectors.filtfft: Apply an convolution filter using an FFT.fillPeaks.MSW-methods: Integrate areas of missing peaks in FTICR-MS data.fillPeaks-methods: Integrate areas of missing peaks.fillPeaks.chrom-methods: Integrate areas of missing peaks.etg: Empirically Transformed Gaussian function.doubleMatrix: Allocate double, integer, or logical matricies.diffreport-methods: Create report of analyte differences.descendZero: Find start and end points of a peak.colMax: Find row and column maximum values.collect-methods: Collect MS^n peaks into xcmsFragments.calibrate: Calibrate peaks for correcting unprecise m/z values.AutoLockMass-methods: Automatic parameter for Lock mass fixing 'AutoLockMass' ~~.absent-methods: Determine which peaks are absent / present in a sample class.

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